Browsing by Author "Karlik, Elif"
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Display of Sukkula distributions on barley roots via in situ hybridization
Karlik, Elif (Firenze University Press, 2020)Retrotransposon are an abundant and ancient parts of the plant genomes that especially LTR retrotransposons influence the genome size and evolution. Sukku-la is a non-autonomous and active, relatively high copy-number ... -
Distinctive SIRE1 retrotransposon patterns on barley chromosomes
Karlik, Elif; Gozukirmizi, Nermin (DergiPark, 2021)SIRE1 is an active and relatively high copy-number retroelement belongs to the Tyl/Copia long terminal repeat (LTR) retrotransposon superfamily. Distinctive SIRE1 elements (ENV and GAG) distributions in barley genome were ... -
Distinctive SIRE1 retrotransposon patterns on barley chromosomes?
Gozukirmizi, Nermin; Karlik, Elif (DergiPark, 2021)SIRE1 is an active and relatively high copy-number retroelement belongs to the Tyl/Copia long terminal repeat (LTR) retrotransposon superfamily. Distinctive SIRE1 elements (ENV and GAG) distributions in barley genome ... -
Endogenous retrovirus HERV-K6 and HERV-K11 polymorphisms’ analyses in head and neck squamous cell carcinoma patients
Karlik, Elif; Gurbuz, Orkun; Yildiz, Yemliha; Gozukirmizi, Nermin (Elsevier B.V., 2021)Many tumors, such as melanoma, breast cancer, germ cell tumors, renal cancer or ovarian cancer, express HERV proteins, mainly HERV-K (HML6) and HERV-K (HML2). However, there is no report showing any relation between squamous ... -
Expression analysis of lncRNA AK370814 involved in the barley vitamin B6 salvage pathway under salinity
Karlik, Elif; Gozukirmizi, Nermin (Springer, 2018)Long non-coding RNAs (lncRNAs), which are longer than > 200 nt, perform various functions in a variety of important biological processes. The aim of this study is the investigation of relative expression levels of AK372815 ... -
Genome organization changes in GM and non-GM soybean [Glycine max(L.) Merr.] under salinity stress by retro-transposition events
Sahin, Olcay; Karlik, Elif; Meric, Sinan; Ari, Sule; Gozukirmizi, Nermin (Springer, 2020)Genetically modified (GM) crops are developed and cultivated worldwide, providing protection against insects and diseases, or tolerance to herbicides. However, despite the advantages that GM crops, they pose many concerns ... -
History and development of non-coding RNAs
Gozukirmizi N.; Karlik E.; Celebi G. (Nova Science Publishers, Inc., 2020)The recent approaches including whole-genome and RNA-sequencing (RNA-seq) studies have declared the landscape of transcription in eukaryotes is notably more complicated than had been previously appreciated. Many different ... -
İnsan endojen retrovirüslerin kanserle olan ilişkisinin incelenmesi
Karaman, Abdullah; Karlik, Elif (2022)Transpozonlar, genomdaki yerlerini değiştirebilme özelliğine sahip olan hareketli DNA parçalarıdır. Transpozonlar genomdaki yer değiştirme işlemini, transpozisyon olarak adlandırılan bir mekanizma ile gerçekleştirmekte ve ... -
LncRNAs: genetic and epigenetic effects in plants
Karlik, Elif; Ari, Sule; Gozukirmizi, Nermin (Taylor & Francis Ltd, 2019)Long non-coding RNAs (lncRNAs) transcribed from the eukaryotic genome play important roles in essential biological processes, transcriptional and post-transcriptional gene regulation. LncRNAs act both in the nucleus and ... -
New gene expression regulators: long non-coding RNAs
Gozukirmizi, Nermin; Karlik, Elif (Amer Inst Physics, 2019)Long non-coding RNAs (lncRNAs) play key roles in the regulation of biological processes including response to environmental stresses either transcriptional or post-transcriptional levels. The salinity tolerance of barley ... -
Pioneering in vitro studies for callus formation of colchicum chalcedonicum azn.
Karlik, Elif; Deger, Meltem; Uzen, Erdal; Gozukirmizi, Nermin (TRAKYA UNIV BALKAN YERLESESI ENSTITULER BINASI, 2020)Colchicum calcedonicum Azn is one of the endemic species distributed in Turkey, where many endemic plant species occur. It has long-oval shaped corm under the soil, and usually 3-4 leaves on it. In vitro production of ... -
Potential stress tolerance roles of barley germins and GLPs
Karlik, Elif (Springer, 2021)Germins and germin-like proteins (GLPs) known as germination markers are encoded by multigene families in several plant species, including barley. To date, functional analysis has revealed germins and GLPs are involved in ... -
Role of long noncoding RNAs during stress in cereal crops
Karlik, Elif (Science Direct, 2021)For the last four decades, the journey of long noncoding RNA (lncRNA) biology has been still proceeding with great interest. lncRNAs can exert their functions in diverse biological processes, including development, genomic ... -
Short-term mutagenicity and carcinogenicity tests
Gozukirmizi, Nermin; Karlik, Elif (DergiPark, 2020)The millions of natural and/or synthetic substances with the unknown biological effects found in our environment, their mutagenic and carcinogenic potentials are still unknown. For this reason, it is very important to ... -
Transposon studies on colchium chalcedonicum
Karlik, Elif; Albayrak, Merve; Uzen, Erdal; Gozukirmizi, Nermin (DergiPark, 2019)Colchicum chalcedonicum is one of the endemic plants in Turkey. The aim of this study was the investigation of the retrotransposon SIRE1, Sukkula and Nikita presence and insertion patterns in C. chalcedonicum. The plant ... -
Why lncRNAs were not conserved? Is it for adaptation?
Karlik, Elif (TR- Dizin, 2021)Plants are sessile organisms affected by changing environment, especially biotic and abiotic stress. Long non-coding RNAs (lncRNAs) became prominent as crucial regulators in diverse biological mechanisms, including ...
