Genome organization changes in GM and non-GM soybean [Glycine max(L.) Merr.] under salinity stress by retro-transposition events

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dc.authoridElif Karlık / 0000-0003-0669-2725en_US
dc.authoridNermin Gözükırmızı / 0000-0002-7129-3045
dc.authorscopusidNermin Gözükırmızı / 6701520637
dc.authorscopusidElif Karlık / 56926577900
dc.authorwosidNermin Gözükırmızı / M-1419-2013
dc.authorwosidElif Karlık / N-6348-2018
dc.contributor.authorŞahin, Olcay
dc.contributor.authorKarlık, Elif
dc.contributor.authorMeriç, Sinan
dc.contributor.authorArı, Şule
dc.contributor.authorGözükırmızı, Nermin
dc.date.accessioned2020-08-30T20:06:07Z
dc.date.available2020-08-30T20:06:07Z
dc.date.issued2020
dc.departmentİstinye Üniversitesi, Mühendislik ve Doğa Bilimleri Fakültesi, Moleküler Biyoloji ve Genetik Bölümüen_US
dc.descriptionAri, Sule/0000-0002-7386-4657; Karlik, Elif/0000-0003-0669-2725en_US
dc.descriptionKarlik, Elif ; Gozukirmizi, Nermin (isu author)
dc.description.abstractGenetically modified (GM) crops are developed and cultivated worldwide, providing protection against insects and diseases, or tolerance to herbicides. However, despite the advantages that GM crops, they pose many concerns not only to human and animal health but also to the environment. In the present study, we perform inter-retrotransposon amplified polymorphism (IRAP)-PCR to revealSIRE1,Bagy2andNikitatransposition events in soybean [Glycine max(L.) Merr.] and GM soybean under increasing salt stress conditions (0 mM as control, 80 mm, 120 mM, 160 mM and 200 mM NaCl). Salinity dramatically affected soybean and GM soybean in a similar way that stem lengths, root lengths and leaf areas were reduced compared to control. According to IRAP-PCR results, polymorphism ratios ofSIRE1,Bagy2andNikitaretrotransposons among all samples were found to be 22-100%, 0-73% and 37-100%, respectively. These results are the first direct report to demonstrate the relationship between TEs polymorphisms and salinity stress in soybean and GM soybean. TEs, which may explain part of the new phenotypes, play essential roles in genome and gene evolution. Such information can be useful to understanding of genome organization differences derived from TEs between soybean and GM soybean.en_US
dc.identifier.citationSahin, O., Karlik, E., Meric, S., Ari, S., & Gozukirmizi, N. (2020). Genome organization changes in GM and non-GM soybean {[}Glycine max(L.) Merr.] under salinity stress by retro-transposition events. GENETIC RESOURCES AND CROP EVOLUTION, 67(6), 1551–1566. https://doi.org/10.1007/s10722-020-00928-1en_US
dc.identifier.doi10.1007/s10722-020-00928-1en_US
dc.identifier.endpage1566en_US
dc.identifier.issn0925-9864en_US
dc.identifier.issn1573-5109en_US
dc.identifier.issue6en_US
dc.identifier.scopus2-s2.0-85083427130en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage1551en_US
dc.identifier.urihttps://doi.org/10.1007/s10722-020-00928-1
dc.identifier.urihttps://hdl.handle.net/20.500.12713/368
dc.identifier.volume67en_US
dc.identifier.wosWOS:000542810000018en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.institutionauthorKarlık, Elifen_US
dc.institutionauthorGözükırmızı, Nerminen_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofGenetic Resources and Crop Evolutionen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectGenetically Modified Cropsen_US
dc.subjectTransposable Elementsen_US
dc.subjectSalinity Stressen_US
dc.subjectSoybeanen_US
dc.subjectGm Soybeanen_US
dc.subjectSire1en_US
dc.subjectBagy2en_US
dc.subjectNikitaen_US
dc.titleGenome organization changes in GM and non-GM soybean [Glycine max(L.) Merr.] under salinity stress by retro-transposition eventsen_US
dc.typeArticleen_US

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