Comparative retrotransposon analysis in wheat

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dc.authoridBekir Ahmet Ilgar / 0000-0001-7907-8465en_US
dc.authoridElif Karlık / 0000-0003-0669-2725en_US
dc.authoridSeray Altıntaş / 0000-0001-9215-8435
dc.authorscopusidElif Karlık / 56926577900
dc.authorwosidBekir Ahmet Ilgar / CVZ-7836-2022en_US
dc.authorwosidElif Karlık / GCA-4597-2022en_US
dc.contributor.authorAltıntaş, Seray
dc.contributor.authorIlgar, Bekir Ahmet
dc.contributor.authorKarlık, Elif
dc.date.accessioned2022-12-08T09:49:34Z
dc.date.available2022-12-08T09:49:34Z
dc.date.issued2022en_US
dc.departmentİstinye Üniversitesi, Mühendislik ve Doğa Bilimleri Fakültesi, Moleküler Biyoloji ve Genetik Bölümüen_US
dc.description.abstractThe presence of retrotransposons is associated with polyploidy, especially in wheat, and may cause an increase in genome size. In this study, the evolutionary information was aimed to reveal based on the comparison retrotransposon movements between bread and einkorn wheat. For that reason, the transposition of BARE1, Sukkula and Nikita retrotransposons in bread and einkorn wheat were analysed by using IRAP-PCR molecular marker method. Both monomorphic and polymorphic bands in each wheat species have been demonstrated. IRAP-PCR products of Sukkula retrotransposon was showed as 10 bands in bread wheat, but no bands could be determined in einkorn wheat. Nikita retrotransposon was demonstrated as 6 bands in bread wheat, 14 bands in einkorn wheat. Polymorphism rate was calculated as 81% for Nikita between bread wheat and einkorn wheat. However, the presence of BARE1 were not observed in both species. The obtained findings suggest that Nikita retrotransposon contributes to genome obesity, especially in bread wheat. The failure of Sukkula retrotransposon detection in einkorn wheat indicates that Sukkula may be inserted in the genome of bread wheat by horizontal gene transfer during wheat domestication events. These results may contribute understand the organization of wheat genome during domestication.en_US
dc.identifier.citationALTINTAŞ, S., Ilgar, B. A., & Karlik, E. (2021). Comparative retrotransposon analysis in wheat. Journal of Advanced Research in Natural and Applied Sciences, 7(3), 369-374.en_US
dc.identifier.doi10.28979/jarnas.961832en_US
dc.identifier.endpage374en_US
dc.identifier.issn2757-5195en_US
dc.identifier.issue3en_US
dc.identifier.startpage369en_US
dc.identifier.trdizinid1118354en_US
dc.identifier.urihttp://dx.doi.org/10.28979/jarnas.961832
dc.identifier.urihttps://hdl.handle.net/20.500.12713/3440
dc.identifier.volume7en_US
dc.indekslendigikaynakTR-Dizinen_US
dc.institutionauthorAltıntaş, Seray
dc.institutionauthorIlgar, Bekir Ahmet
dc.institutionauthorKarlık, Elif
dc.language.isoenen_US
dc.relation.ispartofJournal of advanced research in natural and applied sciences (Online)en_US
dc.relation.publicationcategoryMakale - Ulusal Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectBARE1en_US
dc.subjectBread Wheaten_US
dc.subjectEinkorn Wheaten_US
dc.subjectNikitaen_US
dc.subjectSukkulaen_US
dc.titleComparative retrotransposon analysis in wheaten_US
dc.typeArticleen_US

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