Potential stress tolerance roles of barley germins and GLPs

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dc.authoridElif Karlık / 0000-0003-0669-2725en_US
dc.authorscopusidElif Karlık / 56926577900
dc.authorwosidElif Karlık / N-6348-2018
dc.contributor.authorKarlık, Elif
dc.date.accessioned2021-08-09T08:34:41Z
dc.date.available2021-08-09T08:34:41Z
dc.date.issued2021en_US
dc.departmentİstinye Üniversitesi, Mühendislik ve Doğa Bilimleri Fakültesi, Moleküler Biyoloji ve Genetik Bölümüen_US
dc.description.abstractGermins and germin-like proteins (GLPs) known as germination markers are encoded by multigene families in several plant species, including barley. To date, functional analysis has revealed germins and GLPs are involved in diverse processes such as embryonic development and stress responses. The aim of this study was the analysis of barley germins and GLPs. In this study, 80 putative germins and GLPs have been identified in barley by using known 17 germins and GLP sequences. Analysis of germins and GLPs showed all germins and GLPs are distributed on all seven chromosomes that most of them spread through chromosome 3, 4 and 7 with 16, 18 and 12 proteins on each, respectively. The protein sizes varied between 185 and 335 amino acids, with an average length of 225 aa. Twelve conserved motifs were found. While germin motifs 1 and 3 were detected in all germins and GLPs, some motifs were found to be related to signalization. Interestingly, protein-protein interaction analysis demonstrated some GLPs are associated with RAB6-interacting golgin, oligopeptide transmembrane transporter activity, beta-glucuronidase activity, protein N-linked glycosylation, multi-pass membrane protein, and proteins containing zinc finger (Znf) domain and RING (really interesting new gene)-type zinc finger domains. Our findings suggest that barley germins and GLPs may have diverse functions that make them important candidates for crop improvement.en_US
dc.identifier.citationKarlik E. (2021). Potential stress tolerance roles of barley germins and GLPs. Development genes and evolution, 10.1007/s00427-021-00680-1. Advance online publication. https://doi.org/10.1007/s00427-021-00680-1en_US
dc.identifier.doi10.1007/s00427-021-00680-1en_US
dc.identifier.pmid34363524en_US
dc.identifier.scopus2-s2.0-85112069883en_US
dc.identifier.scopusqualityN/Aen_US
dc.identifier.urihttps://doi.org/10.1007/s00427-021-00680-
dc.identifier.urihttps://hdl.handle.net/20.500.12713/1985
dc.identifier.wosWOS:000682635100001en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.institutionauthorKarlık, Elif
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofDevelopment Genes and Evolutionen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectBarleyen_US
dc.subjectGermin-like Proteinsen_US
dc.subjectGerminsen_US
dc.subjectHordeum Vulgare Len_US
dc.subjectProtein Analysisen_US
dc.titlePotential stress tolerance roles of barley germins and GLPsen_US
dc.typeArticleen_US

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